Complete Genome Report of a Hydrocarbon-Degrading Sphingobium yanoikuyae S72

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AudienciaPúblico en generales_ES
CoberturaMéxicoes_ES
Fecha de ingreso2026-09-15T00:30:20Z
Fecha de publicación2022-01-01
ResumenSphingobium yanoikuyae S72 was isolated from the rhizosphere of sorghum plant in Mexico and we evaluated its survival and role in the degradation of some selected monoaromatic hydrocarbons and polycyclic aromatic hydrocarbons (PAHs) using minimal medium (Bushnell Hass medium (BH)) in which each of the hydrocarbons (naphthalene, phenanthrene, xylene, toluene, and biphenyl) served as sole carbon source. Gas column chromatography–mass spectrometry analysis was used to evaluate the effect of S72’s growth in the medium with the hydrocarbons. The genome of the S72 was sequenced to determine the genetic basis for the degradation of the selected hydrocarbon in S72. The genome was assembled de novo with Spades assembler and Velvet assembler and the obtained contigs were reduced to 1 manually using Consed software. Genome annotation was carried out Prokka version 1.12, and gene calling and further annotation was carried out with NCBI PGAAP. Pangenome analysis and COG annotation were done with bacteria pangenome analysis tool (BPGA) and with PATRIC online server, respectively. S72 grew effectively in the culture medium with the hydrocarbon with concentration ranging from 20–100 mg/mL for each hydrocarbon tested. S72 degraded biphenyl by 85%, phenanthrene by 93%, naphthalene by 81%, xylene by 19%, and toluene by 30%. The sequenced S72 genome was reduced to 1 contig and genome analysis revealed the presence of genes essential for the degradation of hydrocarbons in S72. A total of 126 unique genes in S72 are associated with the degradation of hydrocarbons and xenobiotics. S72 grew effectively in the tested hydrocarbon and shows good degradation efficiency. S72 will therefore be a good candidate for bioremediation of hydrocarbon contaminated soil.es_ES
Doihttps://doi.org/10.3390/app12126201es_ES
URIhttps://riuat.uat.edu.mx/handle/123456789/2281
Idiomaeses_ES
EditorialMDPI AGes_ES
RelaciónApplied Scienceses_ES
URL relacionadohttps://doi.org/10.3390/app12126201es_ES
DerechosAcceso abierto (Metadatos de producción científica)es_ES
Licenciahttp://purl.org/coar/access_right/c_abf2es_ES
FuenteApplied Sciences
TítuloComplete Genome Report of a Hydrocarbon-Degrading Sphingobium yanoikuyae S72es_ES
TipoArtículoes_ES
ArbitradoHa sido Arbitradoes_ES
AutorLopez, Eric Sanchez
AutorElufisan, Temidayo Oluyomi
AutorBustos, Patricia
AutorCharles, Claudia Paola Mendoza
AutorMendoza-Herrera, Alberto
AutorGuo, Xianwu
AutorLopez, Eric Sanchezes_ES
AutorElufisan, Temidayo Oluyomies_ES
AutorBustos, Patriciaes_ES
AutorCharles, Claudia Paola Mendozaes_ES
AutorMendoza-Herrera, Albertoes_ES
AutorGuo, Xianwues_ES
InstituciónUniversidad Autónoma de Tamaulipas
InstituciónUniversidad Autónoma de Tamaulipases_ES
Número12es_ES
Rango de páginas6201es_ES
URL relacionadahttps://doi.org/10.3390/app12126201
Tipo de artículoIndexado
Tipo de artículoIndexadoes_ES
Volumen12es_ES

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